1- Fuel injector cleaner is a good idea
2- I doubt you can gap the OEM plugs, they are likely multi-electrode type plugs, also you cant really clean modern spark plugs like you could in the good ole days
3- There are no plug wires, the VW products use COP (coil-on-plug) systems and these coils are known troublemakers.
4- Yeap, the battery not cranking enough is always an issue, also, in modern cars the battery can have enough juice to crank, but not enough to actually start the car. The motor will turn over, but the ECU does not see over X volts (usually 9 but it varies) the car will not start.
If it were me (and what to I know) I would-
Check the battery, and its ok to take it to an auto parts store for this, but even if they say its ok there can be other issues, such as corrosion on the terminals etc. One thing about living in an arid region like Denver is the battery life tends to be shorter because the water in the batteries evaporate at a higher rate, and most people dont remember back in the ole days when you had to heck the water in batteries...
Next I would put in new plugs.No use in checking them or whatever, its been flooded so replace the plugs. Use only NGK. You can use Bosch, but Bosch plugs are pretty much junk so use NGK.
Stuck injectors are a possibility, but you have no idea how bad it has to be to actually flood a modern car bad enough that it wont start. Still, it will not hurt to run a tank full of treated fuel through it. Also, use REGULAR. Regular fuel is much more volatile than premium and ignites easier. The entire reason for using higher octane (premium) fuel is to slow down the burn rate, which we are not concerned with here. Try and use fuel from a trusted source. Water in the fuel can be a bastard.
ASSuming that there is still an issue after this, STOP and take it to someone who knows what they are doing, because you may be looking at a component failure. Chris (tmleader03) is a good guy, and I may have time to help you out myself depending on timing. Whatever you do I would recommend being careful as VW's are cars a lot of people claim expertise in but those are the people who spend more time replacing things because they are guessing than properly diagnosing and fixing the issue.
If you want to run anything by me or get some input, all my contact info is at grid-1.net



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